The diapirism in the Yinggehai Basin is a combined result of strong overpressure caused by rapid sedimentation of fine-grain sediments and the tensile stress field resulting from right-lateral slip of the boundary-fault. The diapirism showed multiple-stage, episodic nature, and caused intermittent counter-direction onlaps and changes in the thickness of strata. The shallow gas reservoirs in the diapir structural zone displayed obvious inter-reservoir compositional heterogeneities, and their filling history could be divided into 4 stages, with gases injected during different stages having different hydrocarbon gas, CO2 and N2 contents and different stable isotope compositions. The multiple-episode, intermittent activities of the diapirs, multiple-stage, non-continuous injections of fluids, and the transient thermal effect of fluid flow as well as the strong migration fractionation reflected episodic fluid injection and natural gas accumulation.